# Copyright (C) 2003-2005 Peter J. Verveer # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # # 1. Redistributions of source code must retain the above copyright # notice, this list of conditions and the following disclaimer. # # 2. Redistributions in binary form must reproduce the above # copyright notice, this list of conditions and the following # disclaimer in the documentation and/or other materials provided # with the distribution. # # 3. The name of the author may not be used to endorse or promote # products derived from this software without specific prior # written permission. # # THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS # OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED # WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE # ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY # DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL # DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE # GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING # NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. import numarray import _ni_support import _nd_image import filters def _center_is_true(structure, origin): structure = numarray.array(structure) coor = tuple([oo + ss // 2 for ss, oo in zip(structure.shape, origin)]) return bool(structure[coor]) def iterate_structure(structure, iterations, origin = None): """Iterate a structure by dilating it with itself. If origin is None, only the iterated structure is returned. If not, a tuple of the iterated structure and the modified origin is returned. """ structure = numarray.asarray(structure) if iterations < 2: return structure.copy() ni = iterations - 1 shape = [ii + ni * (ii - 1) for ii in structure.shape] pos = [ni * (structure.shape[ii] / 2) for ii in range(len(shape))] slc = [slice(pos[ii], pos[ii] + structure.shape[ii], None) for ii in range(len(shape))] out = numarray.zeros(shape, numarray.Bool) out[slc] = structure != 0 out = binary_dilation(out, structure, iterations = ni) if origin is None: return out else: origin = _ni_support._normalize_sequence(origin, structure.rank) origin = [iterations * o for o in origin] return out, origin def generate_binary_structure(rank, connectivity): """Generate a binary structure for binary morphological operations. The inputs are the rank of the array to which the structure will be applied and the square of the connectivity of the structure. """ if connectivity < 1: connectivity = 1 if rank < 1: if connectivity < 1: return numarray.array(0, type = numarray.Bool) else: return numarray.array(1, type = numarray.Bool) output = numarray.zeros([3] * rank, numarray.Bool) output = numarray.abs(numarray.indices([3] * rank) - 1) output = numarray.add.reduce(output, 0) return numarray.asarray(output <= connectivity, type = numarray.Bool) def _binary_erosion(input, structure, iterations, mask, output, border_value, origin, invert, brute_force): input = numarray.asarray(input) if isinstance(input.type(), numarray.ComplexType): raise TypeError, 'Complex type not supported' if structure is None: structure = generate_binary_structure(input.rank, 1) else: structure = numarray.asarray(structure, type = numarray.Bool) if structure.rank != input.rank: raise RuntimeError, 'structure rank must equal input rank' if not structure.iscontiguous(): structure = structure.copy() if structure.nelements() < 1: raise RuntimeError, 'structure must not be empty' if mask is not None: mask = numarray.asarray(mask) if mask.shape != input.shape: raise RuntimeError, 'mask and input must have equal sizes' origin = _ni_support._normalize_sequence(origin, input.rank) cit = _center_is_true(structure, origin) if isinstance(output, numarray.NumArray): if isinstance(output.type(), numarray.ComplexType): raise TypeError, 'Complex output type not supported' else: output = numarray.Bool output, return_value = _ni_support._get_output(output, input) if iterations == 1: _nd_image.binary_erosion(input, structure, mask, output, border_value, origin, invert, cit, 0) return return_value elif cit and not brute_force: changed, coordinate_list = _nd_image.binary_erosion(input, structure, mask, output, border_value, origin, invert, cit, 1) structure = structure[tuple([slice(None, None, -1)] * structure.rank)] for ii in range(len(origin)): origin[ii] = -origin[ii] if not structure.shape[ii] & 1: origin[ii] -= 1 if mask != None: msk = numarray.asarray(mask, type = numarray.Int8) if msk is mask: msk = mask.copy() mask = msk if not structure.iscontiguous(): structure = structure.copy() _nd_image.binary_erosion2(output, structure, mask, iterations - 1, origin, invert, coordinate_list) return return_value else: tmp_in = numarray.zeros(input.shape, numarray.Bool) if return_value == None: tmp_out = output else: tmp_out = numarray.zeros(input.shape, numarray.Bool) if not iterations & 1: tmp_in, tmp_out = tmp_out, tmp_in changed = _nd_image.binary_erosion(input, structure, mask, tmp_out, border_value, origin, invert, cit, 0) ii = 1 while (ii < iterations) or (iterations < 1) and changed: tmp_in, tmp_out = tmp_out, tmp_in changed = _nd_image.binary_erosion(tmp_in, structure, mask, tmp_out, border_value, origin, invert, cit, 0) ii += 1 if return_value != None: return tmp_out def binary_erosion(input, structure = None, iterations = 1, mask = None, output = None, border_value = 0, origin = 0, brute_force = False): """Multi-dimensional binary erosion with the given structure. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. The border_value parameter gives the value of the array outside the border. The erosion operation is repeated iterations times. If iterations is less than 1, the erosion is repeated until the result does not change anymore. If a mask is given, only those elements with a true value at the corresponding mask element are modified at each iteration. """ return _binary_erosion(input, structure, iterations, mask, output, border_value, origin, 0, brute_force) def binary_dilation(input, structure = None, iterations = 1, mask = None, output = None, border_value = 0, origin = 0, brute_force = False): """Multi-dimensional binary dilation with the given structure. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. The dilation operation is repeated iterations times. If iterations is less than 1, the dilation is repeated until the result does not change anymore. If a mask is given, only those elements with a true value at the corresponding mask element are modified at each iteration. """ input = numarray.asarray(input) if structure == None: structure = generate_binary_structure(input.rank, 1) origin = _ni_support._normalize_sequence(origin, input.rank) structure = numarray.asarray(structure) structure = structure[tuple([slice(None, None, -1)] * structure.rank)] for ii in range(len(origin)): origin[ii] = -origin[ii] if not structure.shape[ii] & 1: origin[ii] -= 1 return _binary_erosion(input, structure, iterations, mask, output, border_value, origin, 1, brute_force) def binary_opening(input, structure = None, iterations = 1, output = None, origin = 0): """Multi-dimensional binary opening with the given structure. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. The iterations parameter gives the number of times the erosions and then the dilations are done. """ input = numarray.asarray(input) if structure is None: rank = input.rank structure = generate_binary_structure(rank, 1) tmp = binary_erosion(input, structure, iterations, None, None, 0, origin) return binary_dilation(tmp, structure, iterations, None, output, 0, origin) def binary_closing(input, structure = None, iterations = 1, output = None, origin = 0): """Multi-dimensional binary closing with the given structure. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. The iterations parameter gives the number of times the dilations and then the erosions are done. """ input = numarray.asarray(input) if structure is None: rank = input.rank structure = generate_binary_structure(rank, 1) tmp = binary_dilation(input, structure, iterations, None, None, 0, origin) return binary_erosion(tmp, structure, iterations, None, output, 0, origin) def binary_hit_or_miss(input, structure1 = None, structure2 = None, output = None, origin1 = 0, origin2 = None): """Multi-dimensional binary hit-or-miss transform. An output array can optionally be provided. The origin parameters controls the placement of the structuring elements. If the first structuring element is not given one is generated with a squared connectivity equal to one. If the second structuring element is not provided, it set equal to the inverse of the first structuring element. If the origin for the second structure is equal to None it is set equal to the origin of the first. """ input = numarray.asarray(input) if structure1 is None: structure1 = generate_binary_structure(input.rank, 1) if structure2 is None: structure2 = numarray.logical_not(structure1) origin1 = _ni_support._normalize_sequence(origin1, input.rank) if origin2 is None: origin2 = origin1 else: origin2 = _ni_support._normalize_sequence(origin2, input.rank) tmp1 = _binary_erosion(input, structure1, 1, None, None, 0, origin1, 0, False) inplace = isinstance(output, numarray.NumArray) result = _binary_erosion(input, structure2, 1, None, output, 0, origin2, 1, False) if inplace: numarray.logical_not(output, output) numarray.logical_and(tmp1, output, output) else: numarray.logical_not(result, result) return numarray.logical_and(tmp1, result) def binary_propagation(input, structure = None, mask = None, output = None, border_value = 0, origin = 0): """Multi-dimensional binary propagation with the given structure. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. If a mask is given, only those elements with a true value at the corresponding mask element are. This function is functionally equivalent to calling binary_dilation with the number of iterations less then one: iterative dilation until the result does not change anymore. """ return binary_dilation(input, structure, -1, mask, output, border_value, origin) def binary_fill_holes(input, structure = None, output = None, origin = 0): """Fill the holes in binary objects. An output array can optionally be provided. The origin parameter controls the placement of the filter. If no structuring element is provided an element is generated with a squared connectivity equal to one. """ mask = numarray.logical_not(input) tmp = numarray.zeros(mask.shape, numarray.Bool) inplace = isinstance(output, numarray.NumArray) if inplace: binary_dilation(tmp, structure, -1, mask, output, 1, origin) numarray.logical_not(output, output) else: output = binary_dilation(tmp, structure, -1, mask, None, 1, origin) numarray.logical_not(output, output) return output def grey_erosion(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Calculate a grey values erosion. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ return filters._min_or_max_filter(input, size, footprint, structure, output, mode, cval, origin, 1) def grey_dilation(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Calculate a grey values dilation. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ if structure is not None: structure = numarray.asarray(structure) structure = structure[tuple([slice(None, None, -1)] * structure.rank)] if footprint is not None: footprint = numarray.asarray(footprint) footprint = footprint[tuple([slice(None, None, -1)] * footprint.rank)] input = numarray.asarray(input) origin = _ni_support._normalize_sequence(origin, input.rank) for ii in range(len(origin)): origin[ii] = -origin[ii] if footprint is not None: sz = footprint.shape[ii] else: sz = size[ii] if not sz & 1: origin[ii] -= 1 return filters._min_or_max_filter(input, size, footprint, structure, output, mode, cval, origin, 0) def grey_opening(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional grey valued opening. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp = grey_erosion(input, size, footprint, structure, None, mode, cval, origin) return grey_dilation(tmp, size, footprint, structure, output, mode, cval, origin) def grey_closing(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional grey valued closing. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp = grey_dilation(input, size, footprint, structure, None, mode, cval, origin) return grey_erosion(tmp, size, footprint, structure, output, mode, cval, origin) def morphological_gradient(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional morphological gradient. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp = grey_dilation(input, size, footprint, structure, None, mode, cval, origin) if isinstance(output, numarray.NumArray): grey_erosion(input, size, footprint, structure, output, mode, cval, origin) return numarray.subtract(tmp, output, output) else: return (tmp - grey_erosion(input, size, footprint, structure, None, mode, cval, origin)) def morphological_laplace(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional morphological laplace. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp1 = grey_dilation(input, size, footprint, structure, None, mode, cval, origin) if isinstance(output, numarray.NumArray): grey_erosion(input, size, footprint, structure, output, mode, cval, origin) numarray.add(tmp1, output, output) del tmp1 numarray.subtract(output, input, output) return numarray.subtract(output, input, output) else: tmp2 = grey_erosion(input, size, footprint, structure, None, mode, cval, origin) numarray.add(tmp1, tmp2, tmp2) del tmp1 numarray.subtract(tmp2, input, tmp2) numarray.subtract(tmp2, input, tmp2) return tmp2 def white_tophat(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional white tophat filter. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp = grey_erosion(input, size, footprint, structure, None, mode, cval, origin) if isinstance(output, numarray.NumArray): grey_dilation(tmp, size, footprint, structure, output, mode, cval, origin) del tmp return numarray.subtract(input, output, output) else: tmp = grey_dilation(tmp, size, footprint, structure, None, mode, cval, origin) return input - tmp def black_tophat(input, size = None, footprint = None, structure = None, output = None, mode = "reflect", cval = 0.0, origin = 0): """Multi-dimensional black tophat filter. Either a size or a footprint, or the structure must be provided. An output array can optionally be provided. The origin parameter controls the placement of the filter. The mode parameter determines how the array borders are handled, where cval is the value when mode is equal to 'constant'. """ tmp = grey_dilation(input, size, footprint, structure, None, mode, cval, origin) if isinstance(output, numarray.NumArray): grey_erosion(tmp, size, footprint, structure, output, mode, cval, origin) del tmp return numarray.subtract(output, input, output) else: tmp = grey_erosion(tmp, size, footprint, structure, None, mode, cval, origin) return tmp - input def distance_transform_bf(input, metric = "euclidean", sampling = None, return_distances = True, return_indices = False, distances = None, indices = None): """Distance transform function by a brute force algorithm. This function calculates the distance transform of the input, by replacing each background element (zero values), with its shortest distance to the foreground (any element non-zero). Three types of distance metric are supported: 'euclidean', 'city_block' and 'chessboard'. In addition to the distance transform, the feature transform can be calculated. In this case the index of the closest background element is returned along the first axis of the result. The return_distances, and return_indices flags can be used to indicate if the distance transform, the feature transform, or both must be returned. Optionally the sampling along each axis can be given by the sampling parameter which should be a sequence of length equal to the input rank, or a single number in which the sampling is assumed to be equal along all axes. This parameter is only used in the case of the euclidean distance transform. This function employs a slow brute force algorithm, see also the function distance_transform_cdt for more efficient city_block and chessboard algorithms. the distances and indices arguments can be used to give optional output arrays that must be of the correct size and type (Float64 and Int32). """ if (not return_distances) and (not return_indices): msg = 'at least one of distances/indices must be specified' raise RuntimeError, msg tmp1 = numarray.asarray(input) != 0 struct = generate_binary_structure(tmp1.rank, tmp1.rank) tmp2 = binary_dilation(tmp1, struct) tmp2 = numarray.logical_xor(tmp1, tmp2) tmp1 = tmp1.astype(numarray.Int8) - tmp2.astype(numarray.Int8) del tmp2 metric = metric.lower() if metric == 'euclidean': metric = 1 elif metric == 'cityblock': metric = 2 elif metric == 'chessboard': metric = 3 else: raise RuntimeError, 'distance metric not supported' if sampling != None: sampling = _ni_support._normalize_sequence(sampling, tmp1.rank) sampling = numarray.asarray(sampling, type = numarray.Float64) if not sampling.iscontiguous(): sampling = sampling.copy() if return_indices: ft = numarray.zeros(tmp1.shape, type = numarray.Int32) else: ft = None if return_distances: if distances == None: if metric == 1: dt = numarray.zeros(tmp1.shape, type = numarray.Float64) else: dt = numarray.zeros(tmp1.shape, type = numarray.UInt32) else: if distances.shape != tmp1.shape: raise RuntimeError, 'distances array has wrong shape' if metric == 1: if distances.type() != numarray.Float64: raise RuntimeError, 'distances array must be Float64' else: if distances.type() != numarray.UInt32: raise RuntimeError, 'distances array must be UInt32' dt = distances else: dt = None _nd_image.distance_transform_bf(tmp1, metric, sampling, dt, ft) if return_indices: if isinstance(indices, numarray.NumArray): if indices.type() != numarray.Int32: raise RuntimeError, 'indices must of Int32 type' if indices.shape != (tmp1.rank,) + tmp1.shape: raise RuntimeError, 'indices has wrong shape' tmp2 = indices else: tmp2 = numarray.indices(tmp1.shape, type = numarray.Int32) ft = numarray.ravel(ft) for ii in range(tmp2.shape[0]): rtmp = numarray.ravel(tmp2[ii, ...])[ft] rtmp.setshape(tmp1.shape) tmp2[ii, ...] = rtmp ft = tmp2 # construct and return the result result = [] if return_distances and not isinstance(distances, numarray.NumArray): result.append(dt) if return_indices and not isinstance(indices, numarray.NumArray): result.append(ft) if len(result) == 2: return tuple(result) elif len(result) == 1: return result[0] else: return None def distance_transform_cdt(input, structure = 'chessboard', return_distances = True, return_indices = False, distances = None, indices = None): """Distance transform for chamfer type of transforms. The structure determines the type of chamfering that is done. If the structure is equal to 'cityblock' a structure is generated using generate_binary_structure with a squared distance equal to 1. If the structure is equal to 'chessboard', a structure is generated using generate_binary_structure with a squared distance equal to the rank of the array. These choices correspond to the common interpretations of the cityblock and the chessboard distance metrics in two dimensions. In addition to the distance transform, the feature transform can be calculated. In this case the index of the closest background element is returned along the first axis of the result. The return_distances, and return_indices flags can be used to indicate if the distance transform, the feature transform, or both must be returned. The distances and indices arguments can be used to give optional output arrays that must be of the correct size and type (both Int32). """ if (not return_distances) and (not return_indices): msg = 'at least one of distances/indices must be specified' raise RuntimeError, msg ft_inplace = isinstance(indices, numarray.NumArray) dt_inplace = isinstance(distances, numarray.NumArray) input = numarray.asarray(input) if structure == 'cityblock': rank = input.rank structure = generate_binary_structure(rank, 1) elif structure == 'chessboard': rank = input.rank structure = generate_binary_structure(rank, rank) else: try: structure = numarray.asarray(structure) except: raise RuntimeError, 'invalid structure provided' for s in structure.shape: if s != 3: raise RuntimeError, 'structure sizes must be equal to 3' if not structure.iscontiguous(): structure = structure.copy() if dt_inplace: if distances.type() != numarray.Int32: raise RuntimeError, 'distances must be of Int32 type' if distances.shape != input.shape: raise RuntimeError, 'distances has wrong shape' dt = distances dt[...] = numarray.where(input, -1, 0).astype(numarray.Int32) else: dt = numarray.where(input, -1, 0).astype(numarray.Int32) rank = dt.rank if return_indices: sz = dt.nelements() ft = numarray.arange(sz, shape=dt.shape, type = numarray.Int32) else: ft = None _nd_image.distance_transform_op(structure, dt, ft) dt = dt[tuple([slice(None, None, -1)] * rank)] if return_indices: ft = ft[tuple([slice(None, None, -1)] * rank)] _nd_image.distance_transform_op(structure, dt, ft) dt = dt[tuple([slice(None, None, -1)] * rank)] if return_indices: ft = ft[tuple([slice(None, None, -1)] * rank)] ft = numarray.ravel(ft) if ft_inplace: if indices.type() != numarray.Int32: raise RuntimeError, 'indices must of Int32 type' if indices.shape != (dt.rank,) + dt.shape: raise RuntimeError, 'indices has wrong shape' tmp = indices else: tmp = numarray.indices(dt.shape, type = numarray.Int32) for ii in range(tmp.shape[0]): rtmp = numarray.ravel(tmp[ii, ...])[ft] rtmp.setshape(dt.shape) tmp[ii, ...] = rtmp ft = tmp # construct and return the result result = [] if return_distances and not dt_inplace: result.append(dt) if return_indices and not ft_inplace: result.append(ft) if len(result) == 2: return tuple(result) elif len(result) == 1: return result[0] else: return None def distance_transform_edt(input, sampling = None, return_distances = True, return_indices = False, distances = None, indices = None): """Exact euclidean distance transform. In addition to the distance transform, the feature transform can be calculated. In this case the index of the closest background element is returned along the first axis of the result. The return_distances, and return_indices flags can be used to indicate if the distance transform, the feature transform, or both must be returned. Optionally the sampling along each axis can be given by the sampling parameter which should be a sequence of length equal to the input rank, or a single number in which the sampling is assumed to be equal along all axes. the distances and indices arguments can be used to give optional output arrays that must be of the correct size and type (Float64 and Int32). """ if (not return_distances) and (not return_indices): msg = 'at least one of distances/indices must be specified' raise RuntimeError, msg ft_inplace = isinstance(indices, numarray.NumArray) dt_inplace = isinstance(distances, numarray.NumArray) # calculate the feature transform input = numarray.where(input, 1, 0).astype(numarray.Int8) if sampling is not None: sampling = _ni_support._normalize_sequence(sampling, input.rank) sampling = numarray.asarray(sampling, type = numarray.Float64) if not sampling.iscontiguous(): sampling = sampling.copy() if ft_inplace: ft = indices if ft.shape != (input.rank,) + input.shape: raise RuntimeError, 'indices has wrong shape' if ft.type() != numarray.Int32: raise RuntimeError, 'indices must be of Int32 type' else: ft = numarray.zeros((input.rank,) + input.shape, type = numarray.Int32) _nd_image.euclidean_feature_transform(input, sampling, ft) # if requested, calculate the distance transform if return_distances: dt = ft - numarray.indices(input.shape, type = ft.type()) dt = dt.astype(numarray.Float64) if sampling is not None: for ii in range(len(sampling)): dt[ii, ...] *= sampling[ii] numarray.multiply(dt, dt, dt) if dt_inplace: dt = numarray.add.reduce(dt, axis = 0) if distances.shape != dt.shape: raise RuntimeError, 'indices has wrong shape' if distances.type() != numarray.Float64: raise RuntimeError, 'indices must be of Float64 type' numarray.sqrt(dt, distances) del dt else: dt = numarray.add.reduce(dt, axis = 0) dt = numarray.sqrt(dt) # construct and return the result result = [] if return_distances and not dt_inplace: result.append(dt) if return_indices and not ft_inplace: result.append(ft) if len(result) == 2: return tuple(result) elif len(result) == 1: return result[0] else: return None